Showing posts with label microbes. Show all posts
Showing posts with label microbes. Show all posts

Sunday, May 24, 2015

The "Genes of Culture" In Civilization

Van Gogh: "Ward of Arles Hospital"
I. The Evolution of Culture

How is the evolution of culture different from the evolution of individuals?

We don't miss a beat or a step when the notion of individual people having genes is discussed.

But that is not so when it comes to the "genetic make-up" of a culture.

The reaction to that would be "how could a society, culture, or civilization have genes" except within individuals of that culture?

That is a fair question.

We are not talking about adding up the unique, physical genes of all the individuals to thereby derive the overall quantity of "genes of a culture."

No, as will be discussed below, we are talking somewhat more about epigenetics, as well as memes and memetics than we are talking about physical RNA / DNA.

That said, neither are we talking exclusively about memes and memetics, because group dynamics are often talked about in terms of culture and observable characteristics swirling within that culture (see e.g. Comparing a Meme Complex to a Cultural Amygdala, Comparing a Group-Mind Trance to a Cultural Amygdala).

II. Where Do We Observe It?

A reviewer noticed that sometimes it can be a bridge too far to try to equate or link individual genetic dynamics to the dynamics of a group/culture:
But for the same reason that the book has a near-flawless takeoff, it crashes in the end. The way that Trivers structures the text requires that he zero in on a concrete example within each chapter’s more general subject. For biological concepts, this strategy makes the reading highly accessible.

But it backfires when Trivers uses it to apply his theory of self-deception in the areas of war, religion, and false historical narratives. These subjects are too broad, and his links to self-deception too tenuous, to be compelling. By having such specificity, Trivers pigeonholes his arguments and greatly simplifies issues that are not as black-and-white as he claims.
(Review of Folly of Fools, by Robert Trivers). It is difficult to build a bridge across that gap between individual, physical genetics and some of the troubling behaviors of groups.

That is why there are other "takes" on that same book and its theme: (Academia Edu, Deceit by Trivers, Deception, Is Trivers Deceiving Himself?, Trivers Wikipedia, Trivers von Hippel, evolution of self-deception).

One thing is for sure though, when self-deceit becomes a part of culture, it goes all the way to the bone:
The American Psychological Association secretly collaborated with the administration of President George W. Bush to bolster a legal and ethical justification for the torture of prisoners swept up in the post-Sept. 11 war on terror, according to a new report by a group of dissident health professionals and human rights activists.

The report is the first to examine the association’s role in the interrogation program. It contends, using newly disclosed emails, that the group’s actions to keep psychologists involved in the interrogation program coincided closely with efforts by senior Bush administration officials to salvage the program after the public disclosure in 2004 of graphic photos of prisoner abuse by American military personnel at Abu Ghraib prison in Iraq.
(American Psychological Association Ok With Torture). It is a bit disconcerting when the groups responsible for watching for, identifying, and then treating a social malady are overcome by that very social malady (Minds in Tumult, Presidential Psycho Team).

One of the dangers of the type of hypothesis that seeks to find and analyze the maladjusted behavioral dynamics inside the culture of a particular group, is a type of group-think influenced by the notion of "collective guilt" (The Psychology of the Notion of Collective Guilt).

Individuals can be slandered by it even though they are not individually guilty of the wrongs of the group itself (e.g. "all Islamic believers are evil therefore it is ok to torture or mistreat any of them").

It is important to remember that groups are composed of individuals who can and do differ, and therefore must also be considered in that light, i.e., as individuals as well being considered as group members.

Individuals in a group could metaphorically be considered as the individual genes of the group, which we know do have different characteristics.

It is clear, then, that as a preliminary matter we ought not paint everyone with the same group-brush merely because they are members of a group.

This is especially so when we now know the importance of epigenetics (One Man's Junk Gene Is Another Man's Treasure Gene?, The Uncertain Gene - 11, On The Origin of Genieology).

III. Where Does The "Cultural Deceit-Gene" Originate?

The phenomenon of deceit also happens way, way down in the unseen, tiny realm of individuals in groups which, for the most part, help us at every level of the ecosystem on Earth.

I am talking about a veritable universe of microbes and viruses: "there may be a hundred million times more viruses on Earth than there are stars in the universe"  (The Real Dangers With Microbes & Viruses).

At a higher level than RNA and DNA, individual microbes or even groups of them can go crazy to become pathogens.

But, they can also return to sanity (Microbial Languages: Rehabilitation of the Unseen, 2).

Perhaps, by sophisticated honesty via communication they can even be separated from the misbehavior which uses deceit as a technique of survival (On The Origin of Propaganda, 2).

IV. The Toxins of Power Are Hidden

Scientists differ on the dynamics of deceit, and whether deceit is a good thing or a bad thing for society, because for one thing the origins of deceit are hidden.

Some of the hidden details may be because the origin of maladjusted viruses and microbes is part of the history that was made well before humans came to be (Are Microbes The Origin of PTSD?).

In other words, are the catastrophes of history, which cause mass extinctions or mass damage to biological organisms, a source of pathogenic behavior (What Did The Mass Extinctions Do To Viruses and Microbes?)?

V. Conclusion

We need to resist allowing either our education or our knowledge to degenerate into a cultural trance which can morph into mob psychology.

A mob psychology that can threaten our very civilization (Why Sea Level Rise May Be The Greatest Threat To Civilization, 2).



The following video is a brief discussion of collective guilt by association:



Saturday, January 17, 2015

Abiotic Evolution: Can It Explain An Origin For The Toxins of Power? - 3

First, since this series has focused to some degree on stem cells (1st post, 2nd post), and since there was a big row/scrap about some scientific papers concerning stem cells (papers that were said to be flawed); today, I will update/narrow the line of reasoning in this series to the degree that these events might apply.

Note that this blog never agreed nor disagreed with the papers which indicated that stress could generate stem cells ("embryonic-like stem cells could be created by exposing bodily cells to stress" - Nature Retraction Notice).

That dust-up, in the journal Nature, is still ongoing to some degree, because there were some mysteries then which still remain in that ongoing scientific drama:
The investigation also has not explained one of the most notable features of the cells — their ability to form a placenta — something that embryonic stem cells do not generally do. “That is still one question that to me is still a mystery,” says Manuel Serrano, a cancer biologist who has worked with stem cells at the Spanish National Cancer Research Centre in Madrid.

Serrano, like many of his colleagues, was intrigued by the papers, published in Nature in January 2014, reporting that adult cells could behave like stem cells after experiencing severe stress1, 2. To him, the premise made sense — there was ample evidence in the literature that stressed cells were prone to taking on new identities.
(Nature, "Questions Linger Over Stress-induced Stem Cells", emphasis added). There is little to no dispute that stress has an impact on organisms.

In fact, the stress involved in this drama being played out led to the suicide of one of the scientists involved (STAP Paper Co-author Sasai Commits Suicide).

Second, since we apply the toxins of power hypotheses to adults, we can ignore embryonic and other stem cells, to focus directly on adult stem cells:
Adult stem cells. These stem cells are found in small numbers in most adult tissues, such as bone marrow or fat. Compared with embryonic stem cells, adult stem cells have a more limited ability to give rise to various cells of the body.

Until recently, researchers thought adult stem cells could create only similar types of cells. For instance, researchers thought that stem cells residing in the bone marrow could give rise only to blood cells.

However, emerging evidence suggests that adult stem cells may be able to create unrelated types of cells. For instance, bone marrow stem cells may be able to create bone or heart muscle cells.
(Mayo Clinic, emphasis added). So, as these cells are going through the process of "shape shifting", what could cause that morphing process to be initiated, and what toxins could impact upon those cells, and the ones they were morphing into or creating, during and/or after the metamorphic process?

One of the country's top experts on stress (quoted often on this blog) has given stress a substantial amount of thought:
In 1900, what do you think were the leading causes of death in this country?

If you were 20 to 40 years old and a woman, the single riskiest thing you could do was try to give birth. TB, Pneumonia, influenza killed a lot of other people. But few people under the age of 100 die of the flu anymore. Relatively few women die in childbirth. Instead, we die of these utterly bizarre diseases that have never existed before on the planet in any sort of numbers—diseases like heart disease, cancer, adult-onset diabetes, and Alzheimer’s.

Now, some of this has to do with nuts and bolts biology. But some of it has to do with issues that nobody ever had to think about before in medicine—totally bizarre questions like, “What’s your psychological makeup?” or “What’s your social status?” or “How do people with your social status get treated in your society?

And this one: “Why is it that when we’re feeling unloved, we eat more starch?” Figure that out, and you’ve cured half the cases of diabetes in this country.

Indeed, when you look at the diseases that do us in, they are predominantly diseases that can be caused, or made worse, by stress. As a result, most of us in this room will have the profound Westernized luxury of dropping dead someday of a stress-related disease. That’s why it’s so urgent that we understand stress—and how to better manage it.
(How to Relieve Stress, by Dr. Sapolsky; emphasis added). So, the stress addressed in the valid parts of the scientific papers that were recalled by the journal Nature for other reasons, and the subsequent testing (i.e. "embryonic-like stem cells could be created by exposing bodily cells to stress") are still worthy of further consideration.

A substantial number of related events that are causes of, or contributors to, our demise or death are also worthy of further consideration.

Why, then, would anyone question the potential impact of the constant exposure to stress on people who are sitting in seats of power?

Especially since astronomically smaller amounts of exposure to stress in "minor" events, such as traffic jams, can even have an impact:
For 99 percent of the species on this planet, stress is three minutes of screaming terror in the savannah, after which either it’s over with or you’re over with. That’s all you need to know about the subject if you’re a zebra or a lion.

If you’re a human, though, you’ve got to expand the definition of a stressor in a very critical way. If you’re running from a lion, your blood pressure is 180 over 120. But you’re not suffering from high blood pressure—you’re saving your life. Have this same thing happen when you’re stuck in traffic, and you’re not saving your life. Instead you are suffering from stress-induced hypertension.

We humans turn on the stress response with memories, with emotions, with thoughts, and the whole punch line is: That’s not what it evolved for. Do it regularly enough, and you’re going to damage your cardiovascular system. Increased blood flow hammers on the walls of your blood vessels, causing inflammation. Fat and glucose and cholesterol glom on and begin to clog your arteries. That’s bad news. You are more at risk for chronic fatigue, sleep disruption, muscle atrophy, and probably most importantly, adult-onset diabetes, this once obscure disease that’s just on the edge of being the number one killer in this country.

Chronic stress also does bad things to the nervous system. Stress kills neurons in the part of the brain called the hippocampus and weakens the cables between neurons, so they can’t talk to each other. This impairs the formation and retrieval of long-term memory. The opposite thing happens in the amygdala, which is where we see fear in a brain scanner. In the hippocampus, stress causes stuff to shrivel up. But stress feeds the amygdala. It actually gets bigger. Chronic stress creates a hyper-reactive, hysterical amygdala, and this tells us tons about what stress has to do with anxiety disorders.
(ibid, "How to Relieve Stress", emphasis added). Regular readers know that this blog has many posts concerning the impact which the amygdala has on behavior (e.g. The Toxic Bridge To Everywhere, Hypothesis: The Cultural Amygdala).

But, perhaps equally central to the analysis of what impact it has on those in seats of power, the frontal cortex is implicated too:
What about the frontal cortex? It’s the most human part of the brain; we’ve proportionally got more of it than any other species does. And what does the frontal cortex do? It does gratification postponement, self-discipline, long-term planning, emotional regulation. It’s the last part of the brain to fully mature—that doesn’t happen until you’re 25 years old, which explains a lot about the freshmen year of college.

This has a very interesting implication. If this is the last part of the brain to fully develop, by definition, then, it is the part of the brain least constrained by genes and most sculpted by experience. What does chronic stress do to the frontal cortex? Atrophy of neurons, disconnecting circuits. As a result, you make the most idiotic decisions, which are going to haunt you for the rest of your life, and yet you think they’re brilliant at the time. That’s another effect of chronic stress: Your judgment goes down the tubes.
(ibid, "How to Relieve Stress", emphasis added). That fits well with what we see happening in seats of power (e.g. The Peak Of The Oil Wars - 12, New Climate Catastrophe Policy: Triage - 11, The Ignoratti Preacher Says: "The Ice Age Cometh").

And since Dr. Sapolsky said "it [frontal cortex] is the part of the brain least constrained by genes and most sculpted by experience", it might help to review posts related to the impact that experience has on those in seats of power (epigenetic and cultural: One Man's Junk Gene Is Another Man's Treasure Gene?, Choose Your Trances Carefully).

Some of the observations the world makes based on Americans in power, when "judgment goes down the tubes", is to change their perspective on America:
In the early fall of 2014, I traveled from my home in Oslo, Norway, through much of Eastern and Central Europe. Everywhere I went in those two months, moments after locals realized I was an American the questions started and, polite as they usually were, most of them had a single underlying theme: Have Americans gone over the edge? Are you crazy? Please explain.
(The Life and Death of Bright Things - 2, emphasis in original). Stress causes death and lack of judgment, nevertheless its impact on those in power, in some ways, is said to still be a mystery:
The profound evolution of primate neocortex was influenced by the computational demands of living in a complex social environment (Dunbar & Shultz, 2007). For primates, a key factor creating structure within the social environment is power. In nonhuman primates, an animal’s power is partly determined by the degree to which they dominate conspecifics. Those that are able to exert dominance over others gain greater access to valuable resources like food and potential mates (Dunbar, 1980; Lewis, 2002; Watts, 2010). In human societies, power similarly creates “dependence asymmetries,” wherein the powerless depend heavily on the powerful for resources, whereas the powerful enjoy relatively unabated access to resources (Russell & Fiske, 2010). This asymmetry results in differences in how the powerful and the powerless process other individuals. Despite what we know about the effects of power on social information processing, the majority of the evidence is indirect, and the mechanisms underlying power’s influence remain a mystery.
...
Future research will be needed to determine the mechanisms through which power impacts motor resonance. Though it is dangerous to rely solely on brain imaging to infer mental activity (cf. Poldrack, 2006), extant neuroimaging data are crucial for generating testable predictions for this work. In this vein, one possibility is that the posterior superior temporal sulcus (pSTS), a brain region that sends visual input to resonant brain areas, is inhibited or somehow deactivated by high power.
(Power Changes How The Brain Responds To Others, PDF; emphasis added). Clearly, there is mystery still out there to be considered by those laboring in the realm of serious research.

That reality lends some credence to this blogs focus on a broad area of potential sources for the origin toxins of power, from memes all the way to microbes, viruses, and molecules.

Since abiotic evolution still takes place in an area which impacts the relevant areas higher up in the hierarchy of physics, genetics, and biology, in closing today's post, let's take a look at that abiotic source once again:
"The analysis of the original proton wave packet involves an interesting phase problem, and, since the energy distribution is temperature dependent, the whole phenomenon is also temperature dependent."
...
"The tunneling times will depend essentially on the height and the form of the barrier. In DNA, the form of the double-well potentials regulating the hydrogen bonds depend not only on the base pair involved but also on neighboring pairs, their net charges, and the entire electric environment. The tunneling time is hence not only characteristic for a certain biological specimen but is also a function of the position in the DNA molecule involved. The tunneling time is very likely also temperature dependent, even if the protons are well shielded in the double helix. The main problem is whether the tunneling time is very short in comparison to the replication time, or whether there exist organisms where the penetration of the barrier is slow in comparison to the replication." 
...
"It should always be remembered that, in Born's interpretation of quantum mechanics, the quantity |¥|² represents the probability density for finding the proton in a specific position. The tunneling of the wave packet is hence a time-dependent process which is going to influence the properties of the genetic code." 
...
"In this connection, it should be observed that the tunneling probabilities depend not only on the base pair involved but also on the electrostatic environment, the neighboring base pairs, etc., which may explain the occurrence of "hot spots."
...
At a DNA replication, the protons have to "choose sides," and the proton code immediately after a DNA replication represents actually a nonstationary state from the quantum-mechanical point of view. The time evolution of the system and particularly the penetration of the potential barrier in the double-well potential represents a loss of the genetic code which should perhaps be considered as the primary cause of aging. The aging is thus a process which goes on continuously in the DNA molecule but gets "manifested" at the replications.
...
Proton tunneling may finally be of importance in connection with the occurrence of spontaneous tumors. The growth of an individual is a highly refined balance between factors which enhance the cell duplication and other factors which limit this duplication so that the organism takes a specific shape. The entire process is stimulated and controlled by various enzymes, and there is a feedback from the environment about which we know, at present, very little. If there is a somatic mutation, i.e., a change of the genetic code in a DNA molecule in the body of an organism, the change may influence the protein synthesis and the balance between the enhancing and controlling enzyme actions in the growth cycle. Actually, the new genetic code may lead to the development of a "new individual" within the individual, i.e., a tumor."
...
"In this paper we have pointed out that, since the protons are not classical particles but "wave packets" obeying the laws of modern quantum theory, the genetic code cannot --in spite of all precautions-- be 100% stable. Due to the quantum-mechanical "tunnel effect," there is always a small but finite probability that the protons will change place, alter the genetic code, and give rise to mutations. This implies also that this transfer of protons over a distance of about 10-8 cm may be one of the driving forces in the evolution of living organisms on the earth."
(Stem Cell Malfunction A Quantum Toxin Source?, @ Review of Modern Physics). While we digest all this we need to remember that we are considering the impact of the type of stress which is induced or enhanced by exposure to power.

Today, I am saying that such impacts may reach all the way down to the abiotic dynamics that can cause mutations at the atomic level.

I am also saying that those impacts may reach up to higher level genetic dynamics, as well as upon even higher level adult stem cells as they function to repair the damage stress has caused to cells around them.

The previous post in this series is here.

Monday, December 2, 2013

Hypothesis: How Toxins of Power Are Neutralized or Removed

DNA: a molecular machine
Regular readers know that one of the problems with the hypothesis that toxins of power originate at the microscopic level (virus, single celled microbes, etc.) is that some people in power are not overcome by corruption.

Oh yes, the power of their office may stimulate toxins, however, as the hypothetical formulas for toxins of power origination show, those toxins can also be neutralized or overcome by those who are exposed to the toxins while in power, i.e. while in office (e.g. Tables For The Toxins In Power, The Power That Corrupts).

There has been no hypothesis on this Toxins of Power blog, up until now, for how this could happen.

A paper published recently details how pathogens and parasites are converted from dangerous or deadly behavior into mutualistic, symbiotic behavior, which is a complete change of their behavior from toxic bad to helpful good:
Like pretty much all multi-cellular organisms, humans enjoy the benefits of helpful bacteria. (As you may have heard, there are more bacteria in the human body than cells.) These mutualistic microbes live within the body of a larger organism, and, like any good long-term houseguest, help out their hosts, while making a successful life for themselves. It’s a win-win situation for both parties.

Scientists still don’t understand exactly how these relationships began, however. To find out, a team of researchers from the University of California, Riverside, used protein markers to create a detailed phylogenic tree of life for 405 taxa from the Proteobacteria phylum—a diverse group that includes pathogens such as salmonella as well as both mutualistic and free-living species.

Those analyses revealed that mutualism in Proteobacteria independently evolved between 34 to 39 times, the researchers report in the journal Proceedings of the Royal Society B.  The team was a bit surprised to find that this happened so frequently, inferring that evolution apparently views this lifestyle quite favorably.

Their results also show that mutualism most often arises in species that were originally parasites and pathogens.
(Microbial Languages: Rehabilitation of the Unseen -- 2, emphasis in original). This is a discovery which clearly indicates that fundamental changes take place in microbial life, changes which convert them from a "toxic behavior pathogen" into a "helpful behavior symbiont."

I will, in future posts, consider papers that indicate the opposite, that is, the conversion from symbiotic microbes (good guys) into pathogens or parasites (bad guys).

Potential triggering sources for such changes from good to bad has been discussed in Dredd Blog posts Are Microbes The Origin of PTSD? and Weekend Rebel Science Excursion - 16.

Those posts discuss the abrupt changes in all Earth life, including microbes, that happened during the meteorite impact which caused the Fifth Mass Extinction of most Earth life (~90%) some 65 million years ago.

The hypothesis contemplated in today's post should also consider, in bad->good and good->bad behavioral changes, the potential damage to molecular machines within microbes, as well as the repair of damaged molecular machines, as potential reasons for changes in behavior.

In other words, let's consider damaging events as triggers for toxins, but let's also consider repair via healing and remedial behavior as factors for toxin neutralization or removal (see e.g. Putting A Face On Machine Mutation - 4 and the series beginning with The Uncertain Gene).

But, the bottom line is that the genetic material in microbial life, which has been through several mass extinction events on Earth, and perhaps elsewhere, may have recorded reactions within their genes that can be triggered to re-produce bad toxic behavior or good symbiotic behavior, depending on the environmental dynamics being experienced at a given time.

The hypothesis would have to show: 1) how the advent of toxins in an individual who becomes powerful triggers improper genetic ons or offs, and 2) how certain remedial behaviors (think epigenetic behavior) could neutralize or remove that toxic behavior by re-setting the proper genetic ons or offs.

The bottom line is that we are considering both genetic and epigenetic factors in this hypothesis (see e.g. the series The "It's In Your Genes" Myth).

That is all for this post.

The next post in this series is here.

The following video indicates that epigenetic dynamics take place in microbes ... genes do not control them any more or less than genes control us:



Saturday, November 16, 2013

Abiotic Evolution: Can It Explain An Origin For The Toxins of Power? - 2

What activates the Toxins of Power?
In this series regular readers will notice that Toxins of Power Blog has been intellectually honest.

Honest to point out that our ongoing search for a clear and present nexus between an individual experiencing power, and the subsequent advent of toxins of power in that individual, has not been adequately successful yet.

There have been abundant discoveries and discussions about where the toxins can come from, but that is only one side of the coin, so now we must focus on a nexus between those many potential toxin sources and the dynamics of the experience of power.

In other words the search is not over, it does continue.

What triggering mechanism takes place within the individual's subconscious and/or conscious mind when power is experienced by that individual?

In the previous post of this series I indicated:
"In other words, we can see that power corrupts those who are exposed to it for a sufficient amount of time, but we can't explain how power triggers those potential sources which are capable of producing toxins of power.

That linkage is the next series of possibilities we will begin to take a look at so we can try to develop that hypothesis."
(Abiotic Evolution: Can It Explain An Origin For The Toxins of Power?). Some research recently revealed a potential link between toxins and power:
Even the smallest dose of power can change a person. You've probably seen it. Someone gets a promotion or a bit of fame and then, suddenly, they're a little less friendly to the people beneath them.

So here's a question that may seem too simple: Why?

If you ask a psychologist, he or she may tell you that the powerful are simply too busy. They don't have the time to fully attend to their less powerful counterparts.

But if you ask Sukhvinder Obhi, a neuroscientist at Wilfrid Laurier University in Ontario, Canada, he might give you another explanation: Power fundamentally changes how the brain operates.

Obhi and his colleagues, Jeremy Hogeveen and Michael Inzlicht, have a new study showing evidence to support that claim.

Obhi and his fellow researchers randomly put participants in the mindset of feeling either powerful or powerless. They asked the powerless group to write a diary entry about a time they depended on others for help. The powerful group wrote entries about times they were calling the shots.

Then, everybody watched a simple video. In it, an anonymous hand squeezes a rubber ball a handful of times — sort of monotonously. While the video ran, Obhi's team tracked the participants' brains, looking at a special region called the mirror system.
(When Power Goes To Your Head, emphasis added). In future posts we will build the nexus bridge structure available with that new study.

Another study may fit in with those details in the above study as well:
In 1776, Adam Smith famously wrote: "It is not from the benevolence of the butcher, the brewer, or the baker, that we can expect our dinner, but from their regard to their own interest."

Economists have run with this insight for hundreds of years, and some experts think they've run a bit too far. Robert Frank, an economist at Cornell, believes that his profession is squashing cooperation and generosity. And he believes he has the evidence to prove it. Consider these data points:

Less charitable giving: in the U.S., economics professors gave less money to charity than professors in other fields -- including history, philosophy, education, psychology, sociology, anthropology, literature, physics, chemistry, and biology. More than twice as many economics professors gave zero dollars to charity than professors from the other fields.

More deception for personal gain: economics students in Germany were more likely than students from other majors to recommend an overpriced plumber when they were paid to do it.

Greater acceptance of greed: Economics majors and students who had taken at least three economics courses were more likely than their peers to rate greed as "generally good," "correct," and "moral."

Less concern for fairness: Students were given $10 and had to make a proposal about how to divide the money with a peer. If the peer accepted, they had a deal, but if the peer declined, both sides got nothing. On average, economics students proposed to keep 13 percent more money for themselves than students from other majors.

In another experiment, students received money, and could either keep it or donate it to the common pool, where it would be multiplied and divided equally between all participants. On average, students contributed 49 percent of their money, but economics students contributed only 20 percent. When asked what a "fair" contribution was, the non-economists were clear: 100 percent of them said "half or more" (a full 25 percent said "all"). The economists struggled with this question. Over a third of them refused to answer it or gave unintelligible responses. The researchers wrote that the "meaning of 'fairness'... was somewhat alien for this group."

Hearts of Darkness

But maybe studying economics doesn't change people. It could be self-selection: students who already believe in self-interest are drawn to economics.
...
(Does Studying Economics Breed Greed?). The basic direction we are taking is to gather studies showing the brain-circuit level changes that take place, metamorphosis if you will, when an individual experiences power.

We will then follow that information down into the microbial levels to see if relevant microbial communication disruption, toxin level activity, and other activity has been discovered and the results published.

The next post in this series is here, the previous post in this series is here.

Monday, October 7, 2013

Abiotic Evolution: Can It Explain An Origin For The Toxins of Power?

Newly discovered life form
In a previous post the subject of quantum proton tunneling was contemplated as a potential source of genetic mutation.

A genetic mutation which could hypothetically cause or result in the eventual development of toxins of power (Stem Cell Malfunction A Quantum Toxin Source?).

A series at Dredd Blog quotes the same scientific paper written by Per-Olov Löwdin (see The Uncertain Gene) that was quoted here.

That Dredd Blog series goes further to quote more recent papers that are based upon or expound upon Löwdin's paper, as well as quoting several other relevant books and papers (see e.g. The Uncertain Gene - 5).

We have talked about other sources for toxins of power too.

It is quite clear that there are many potential sources for toxins of power to originate either through abiotic evolution, biotic evolution, memetics, behavioral dynamics like epigenetics, and the like.

What is still not clear, still not solved, and still not adequately presented in any workable hypothesis on this blog, so far, is the problem of "what is the link between exposure to power and the advent of the toxins themselves?"

In other words, what happens when someone is exposed to political or other offices which give them power, which therefore expose them to power, and which causes the toxins of power to affect the thinking of those so exposed?

Our case is somewhat like Dr. Semmelweis and others who could not understand  the reasons for what they could observe, and could even control:
If you could ask Ignaz Semmelweis he just might say pseudoscience is "the kind of science that rejects the obvious, then has a violent reaction towards those who don't reject the obvious":
Semmelweis's observations conflicted with the established scientific and medical opinions of the time and his ideas were rejected by the medical community. Some doctors were offended at the suggestion that they should wash their hands and Semmelweis could offer no acceptable scientific explanation for his findings.

Semmelweis's practice earned widespread acceptance only years after his death, when Louis Pasteur confirmed the germ theory. In 1865, Semmelweis was committed to an asylum, where he died of septicemia, at age 47.
(Ignaz Semmelweis, emphasis added). Galileo or Copernicus would have similar notions, as would modern scientists who also experienced blinding bias during their scientific careers.
(What Is Pseudo Science?). In other words, we can see that power corrupts those who are exposed to it for a sufficient amount of time, but we can't explain how power triggers those potential sources which are capable of producing toxins of power.

That linkage is the next series of possibilities we will begin to take a look at so we can try to develop that hypothesis.

Monday, February 25, 2013

Stem Cell Malfunction A Quantum Toxin Source?

Hidden Universe of Complexity
Last year about this time, on Toxins of Power Blog, I was planning to talk about stem cells as a potential source for toxins of power, but decided to wait (Microbial Hermeneutics).

But more papers and information came out about the human microbiome and symbiont microbes.

Then came more research results from the scientific world which revealed the activity of microbe viruses on the genetics of mammals.

So now the time is ripe to talk about a scientific paper that is less than a year old, and a paper which links microbe viruses and stem cells in the most surprising discoveries yet discussed.

So, you decide if it was worth waiting for.

There is some controversy about whether DNA is alive or not, as there is with various viruses, but there is growing evidence for a "virus-first" evolutionary narrative.

I think this is indicated by the role viruses play during stem cell morph into a myriad of different types of cells:
We all started out as a fertilized egg: a solitary cell about as wide as a shaft of hair. That primordial sphere produced the ten trillion cells that make up each of our bodies. We are not merely sacs of identical cells, of course. A couple hundred types of cells arise as we develop. We’re encased in skin, inside of which bone cells form a skeleton; inside the skull are neurons woven into a brain.

What made this alchemy possible? The answer, in part, is viruses.
...
One way cells can switch genes on and off is producing proteins that latch onto nearby stretches of DNA called promoters. The match between the protein and the promoter has to be precise; otherwise, genes will be flipping on at all the wrong times, and failing to make proteins when they’re needed. Pfaff and his colleagues found that all the two-cell genes had identical promoters–which would explain how they all managed to become active at the same time.

What was really remarkable about their discovery was the origin of those promoters. They came from viruses.

During the earliest stage of the embryo’s development, these virus-controlled genes are active. Then the cells clamp down on them, just as they would clamp down on viruses. Once those genes are silenced, the totipotent cells become pluripotent.

Pfaff and his colleagues also discovered something suprising when they looked at the pluripotent ball of cells. From time to time, the pluripotent cells let the virus-controlled genes switch on again, and then shut them back down. All of the cells, it turns out, cycle in and out of what the scientists call a “magic state,” in which they become temporarily totipotent again.
...
Cells in the magic state can give rise to any part of the embryo, as well as the placenta and other tissue outside the embryo. Once the virus-controlled genes get shut down again, they lose that power. This discovery demonstrated that these virus-controlled genes really are crucial for making cells totipotent.

Pfaff and his colleagues propose that the domestication of these virus promoters was a key step in the evolution of mammals with placentas. The idea that viruses made us who were are today may sound bizarre, except that Pfaff is hardly the first person to find evidence for it. Last year, for example, I wrote about how placental mammals stole a virus protein to build the placenta.

A discovery this strange inevitably raises questions that its discoverers cannot answer. What are the virus-controlled genes doing in those first two cells? Nobody knows. How did the domestication of this viral DNA help give rise to placental mammals 100 million years ago? Who knows? Why are viruses so intimately involved in so many parts of pregnancy? Awesome question. A very, very good question. Um, do we have any other questions?
(We Are Viral From the Beginning, Discover, emphasis added). So, a lot of back and forth, a lot of switching on and off, of genetic "buttons" takes place with the assistance of viral elements (or during stem cell body repair episodes).

This increases the risk of mutation, if we factor in some of the details of a paper written by a physicist, of all disciplines.

He explains that at the quantum level, deep down in DNA, "proton tunneling" can cause DNA mutation:
"The analysis of the original proton wave packet involves an interesting phase problem, and, since the energy distribution is temperature dependent, the whole phenomenon is also temperature dependent."
...
"The tunneling times will depend essentially on the height and the form of the barrier. In DNA, the form of the double-well potentials regulating the hydrogen bonds depend not only on the base pair involved but also on neighboring pairs, their net charges, and the entire electric environment. The tunneling time is hence not only characteristic for a certain biological specimen but is also a function of the position in the DNA molecule involved. The tunneling time is very likely also temperature dependent, even if the protons are well shielded in the double helix. The main problem is whether the tunneling time is very short in comparison to the replication time, or whether there exist organisms where the penetration of the barrier is slow in comparison to the replication." 
...
"It should always be remembered that, in Born's interpretation of quantum mechanics, the quantity |¥|² represents the probability density for finding the proton in a specific position. The tunneling of the wave packet is hence a time-dependent process which is going to influence the properties of the genetic code." 
...
"In this connection, it should be observed that the tunneling probabilities depend not only on the base pair involved but also on the electrostatic environment, the neighboring base pairs, etc., which may explain the occurrence of "hot spots."
...
At a DNA replication, the protons have to "choose sides," and the proton code immediately after a DNA replication represents actually a nonstationary state from the quantum-mechanical point of view. The time evolution of the system and particularly the penetration of the potential barrier in the double-well potential represents a loss of the genetic code which should perhaps be considered as the primary cause of aging. The aging is thus a process which goes on continuously in the DNA molecule but gets "manifested" at the replications.
...
Proton tunneling may finally be of importance in connection with the occurrence of spontaneous tumors. The growth of an individual is a highly refined balance between factors which enhance the cell duplication and other factors which limit this duplication so that the organism takes a specific shape. The entire process is stimulated and controlled by various enzymes, and there is a feedback from the environment about which we know, at present, very little. If there is a somatic mutation, i.e., a change of the genetic code in a DNA molecule in the body of an organism, the change may influence the protein synthesis and the balance between the enhancing and controlling enzyme actions in the growth cycle. Actually, the new genetic code may lead to the development of a "new individual" within the individual, i.e., a tumor."
...
"In this paper we have pointed out that, since the protons are not classical particles but "wave packets" obeying the laws of modern quantum theory, the genetic code cannot --in spite of all precautions-- be 100% stable. Due to the quantum-mechanical "tunnel effect," there is always a small but finite probability that the protons will change place, alter the genetic code, and give rise to mutations. This implies also that this transfer of protons over a distance of about 10-8 cm may be one of the driving forces in the evolution of living organisms on the earth."
(Proton Tunneling in DNA and its Biological Implications, by Per-Olov Löwdin; Journal: Review of Modern Physics, Vol 35, No. 3, July 1963, emphasis added). This quantum level proton tunneling behavior is said to be more likely to occur under some conditions than under others.

The likelihood of it happening statistically increases when stem cells are transitioning from one potency phase to another, or back again.

Could this be another suspect place where the mysterious toxins of power emerge as a mutation enhanced by the torque caused by having power over others ("power corrupts ... absolute power corrupts absolutely")?

We can reflect on what Dr. Roger Penrose said about the source of human intelligence, and what Dr. Ernst Mayr said about it, then conclude for ourselves.

Monday, January 21, 2013

Microbial Hermeneutics - 3

Microbes are talking with human cells.
One of the hypotheticals of Toxins of Power, the subject of this blog, is that there is a metamorphosis which takes place in most of those who are exposed to social power (About Toxins Of Power).

While trying to search the Earth and the Universe for the source of the toxins of power that may, in whole or in part, cause that metamorphosis, the Toxins of Power Blog came upon prions, phages, machines, and microbes that are "doing their thing" within the human species.

Upon encountering them, we stumbled upon their ability and practice of communication between and among themselves, as well as their ability and practice of communicating with human cells.

In this series, Microbial Hermeneutics, we have been discussing not only the communication between and among microbes, but we have also been discussing their usage of something we humans also use: hermeneutics.

For a discussion of human hermeneutics see "Hermeneutics For The Blogosphere" and "His Or Hermeneutics?," two Dredd Blog posts that deal with several types of human hermeneutics.

Since hermeneutics is a science concerning the interpretation of communicated messages, and since (like us) cells of all types within our bodies communicate through signals, it became at once obvious to me that a viable hermeneutics that focuses on the inner microbial world of communication is important:
An alternative view is that cells use simpler ‘‘rules’’ to determine
appropriate gene expression levels in response to conflicting signals. But what do these ‘‘rules’’ look like, how complex are they, and to what extent can they be used to predict the response of cells to novel signal combinations?
These issues are increasingly critical throughout biomedical science. Single-cell organisms such as bacteria can live in extraordinarily diverse environments, in and out of hosts, and surrounded by other microbial species and the antibiotics that many of them produce. In this milieu, signal integration abilities are critical to survival. Similarly, in metazoan development, individual signaling pathways rarely work in isolation; rather, cellular responses depend on combinations of inputs from multiple pathways ...
(Microbial Hermeneutics). Signal integration is a vast subject, however, it basically boils down to making sense out of multiple signals.

Which is also the basic task of human hermeneutics (human words, whether spoken, sung, or written are basically signals which need to be interpreted).

Let's also consider that the opposite of signal integration or hermeneutics is miscommunication caused by signal disruption.

However, before we delve a bit into signal disruption or impaired hermeneutics, let's seriously note that the value of microbial and other cellular heremeneutics should not be underestimated:
Normal, healthy cells only reproduce when there is enough space for them to fit. The body can regulate the production of cells by sending signals when to stop. With leukemia, these cells do not respond to the signals to stop and reproduce, regardless of space available.
(Pediatric Leukemia, emphasis added). In the context of microbial cell to cell communication, not responding to signals is a function of either not having received a message in the first place, or of not properly interpreting that signal (note: not responding is only bad when a response to that signal is required).

By taking into consideration childhood leukemia such as acute lymphoblastic leukemia [ALL], we see the results of an absence of adequate cellular or microbial signaling, cellular hermeneutics, or both.

The ultimate nature of signaling fundamentally requires: a signal, a signal sender, a signal receiver, a medium within which the signal can be sent, and an understanding of the particular signal by both sender and receiver.

Thus, we see that the glue which holds communication together is a signaling language that is understood by both the signal sender and the signal receiver.

To thwart communication, a signal disruptor can attack the signal itself during signal transport, or can attack either the sender, the receiver, or both, so that there is a defective signal or a defective hermeneutic episode as to that signal.

A disruption anywhere in that signal chain can result in a misunderstanding, a failure to successfully communicate.

In this sense, we can define some diseases as a failure to successfully communicate, as with the form of leukemia they call "ALL", mentioned above.

The Dredd Blog post, Childhood Leukemia Linked To Government Carelessness, discusses a scenario where, according to the perspectives of this blog, the toxins of power have corrupted those in seats of political power who have then corrupted the signalling abilities of the type this post is concerned with.

That is, the toxins of power have caused those officials in positions of power to unleash signal disruptors, in the form of deadly nuclear radiation, on the populace (There is no safe level of Radiation).

Those disruptors are known to then cause leukemia and other maladies in both adults and children.

In future posts of this series I want to take a look at, yes, focus on that disruption, that is, I want to take a look at, or to pose questions about, which specific areas in that specific signal / communication chain are disrupted or damaged by nuclear power plant radiation.

In theory, that disruption could involve damage to the machines within cells, whether human or microbial cells, damage to their signal sending capacity, damage to their signal receiving capacity, damage to the medium outside those cells -- through-which signals must travel -- or even damage to the hermeneutical abilities of the receiver cell.

The previous post in this series is here.

More signals are coming in future posts, but in the mean time you might enjoy hearing from some of the scientific teams that are able to talk to microbes -- (they know the language of microbes):


Saturday, January 5, 2013

Interlude - 2

In the post Interlude there was an emphasis on the issue of not blaming microbes of every sort for the behavior of a few pathogens that also tend to be parasitic.

There is a world of history that counsels us in this direction, mainly involving the discovery that even microbes with bad behavior at times also have good behavior that helps us.

The exercise, then, is to find out what happened to the good microbes that caused them to become involved in some pathogenic behavior.

There are examples in the history of medicine and science where our culture has caused not only microbes to become pathogens, but culture has sometimes even caused people to become destructive to life.

The example to be used in support of today's post is the microbe Helicobacter pylori:
Helicobacter pylori may be the most successful pathogen in human history. While not as deadly as the bacteria that cause tuberculosis, cholera, and the plague, it infects more people than all the others combined. H. pylori, which migrated out of Africa along with our ancestors, has been intertwined with our species for at least two hundred thousand years. Although the bacterium occupies half the stomachs on earth, its role in our lives was never clear. Then, in 1982, to the astonishment of the medical world, two scientists, Barry Marshall and J. Robin Warren, discovered that H. pylori is the principal cause of gastritis and peptic ulcers; it has since been associated with an increased risk of stomach cancer as well.
(Germs Are Us, New Yorker). The author of that piece, Michael Specter, goes on to point out that we went overboard once that factoid was discovered:
The consensus was clear; as one prominent gastroenterologist wrote in 1997, “The only good Helicobacter pylori is a dead Helicobacter pylori.” Eradication proved complicated and expensive, however, and the effort never gained momentum. Yet few scientists questioned the goal. “Helicobacter was a cause of cancer and of ulcers,’’ Martin J. Blaser, the chairman of the Department of Medicine and a professor of microbiology at the New York University School of Medicine, told me recently. “It was bad for us. So the idea was to get it out of our bodies, as fast as we can. I don’t know of anyone who said, Gee, we better think about the consequences.”
(ibid, emphasis added). Eradication without understanding is risky business, as we have seen over and over in the history of human interaction with the environment.

Predators are sometimes overkilled, then we suffer the consequences because we then have lost the moderating role that predators play.

The same dynamic applies to the relatively few microbe species that become pathogenic for some reason or another, and it even applies to the microbe Helicobacter pylori:
No one was more eager to rout the organism from the human gut than Blaser, who has devoted most of his working life to the study of H. pylori. His laboratory at N.Y.U. developed the first standard blood tests to identify the microbe, and most of them are commonly in use today. But Blaser, a restless intellect who, in addition to his medical duties, helped start the Bellevue Literary Review, wondered how an organism as old as humans could survive if it caused nothing but harm. “That isn’t how evolution works,” he said. “H. pylori is an ancestral component of humanity.” By the nineteen-nineties, Blaser had begun to look more closely at the bacterium’s molecular behavior, and in 1998 he published a paper in the British Medical Journal suggesting, contrary to prevailing views, that it might not be so dangerous after all. The following year, he started the Foundation for Bacteriology, to help focus attention on the critical, and usually positive, role that these organisms play in human evolution.
(ibid, emphasis added). Blaser goes on to tie research into the new understanding:
In the past decade, however, aided by the rapidly escalating power of computer processing and by the same revolution in DNA-sequencing technology that made it possible to map our genome, another truth has emerged: while our health is certainly influenced by genes, it may be affected even more powerfully by bacteria.

We inherit every one of our genes, but we leave the womb without a single microbe. As we pass through our mother’s birth canal, we begin to attract entire colonies of bacteria. By the time a child can crawl, he has been blanketed by an enormous, unseen cloud of microorganisms—a hundred trillion or more. They are bacteria, mostly, but also viruses and fungi (including a variety of yeasts), and they come at us from all directions: other people, food, furniture, clothing, cars, buildings, trees, pets, even the air we breathe. They congregate in our digestive systems and our mouths, fill the space between our teeth, cover our skin, and line our throats. We are inhabited by as many as ten thousand bacterial species; these [microbe] cells outnumber those which we consider our own by ten to one, and weigh, all told, about three pounds—the same as our brain. Together, they are referred to as our microbiome—and they play such a crucial role in our lives that scientists like Blaser have begun to reconsider what it means to be human.

“I love genetics,” Blaser said. “But the model that places our genes at the root of all human development is wrong ..."
(ibid, emphasis added). Regular readers know that this blog and its co-blogs have been aware of the revolution that has taken place in microbiology and genetics, and has been informing readers of those developments (see e.g. Microbial Hermeneutics, The "It's In Your Genes" Myth, Hypothesis: Microbes Generate Toxins of Power, and On The New Meaning of "Human").

In conclusion of this post, when we study the affects of power on those in the seats of power, we use the same approach that should be used in the study of microbes.

That is, one does not condemn all people in power because of the corruption that the few succumb to, rather, one focuses on the bulls-eye to find the cause, then apply a remedy to that situation, to that person in power, and more specifically, to the microbial, viral, or other source of the toxins of power that infect them.

Likewise, we want to find out how the toxins of power originate so as to treat only the area of the problem, not to massively destroy good microbes along with the malfunctioning microbes:
The passengers in our microbiome contain at least four million genes, and they work constantly on our behalf: they manufacture vitamins and patrol our guts to prevent infections; they help to form and bolster our immune systems, and digest food. Recent research suggests that bacteria may even alter our brain chemistry, thus affecting our moods and behavior.
(ibid). In fact, the goal should ultimately be to learn how to repair any malfunctioning microbes so that they become stronger to the point of being immune from future malfunction that may once again attempt to produce toxins of power.

The previous post in this series is here.

Saturday, August 18, 2012

Interlude

Behavior modifies genes and microbes
There may be a perceived contradiction among the various hypotheses Toxins of Power Blog talks about concerning the origin of the toxins of power.

So, before proceeding let's clear the air of some of the fog that perception might generate.

First, let's note again for the record that Toxins of Power Blog has posted from the inception of these series the assertion that behavior can lead to conditions for the generation of toxins of power.

However, equally important is the repeated assertion that behavior can also control or neutralize those toxins by generating anti-toxins.

So let's reflect on quotes from earlier posts to firm up that aspect, noting the notion of anti-toxins:
This formula shows that the exercise of any official is to resist corrupting toxins via antitoxins. The goal is to bring "T" and "A" to the same value, so that T - A sums to zero.
...
Finally, we need to ask what [behaviors], then, are toxins and what are their numeric values, and what [behaviors] are antitoxins and what are their numeric values.
(Tables For The Toxins In Power). Fundamentally the hypothesis provides tables which indicate that some behaviors are toxic so those behaviors are likely to increase the presence of toxins of power, but to the contrary other behaviors are anti-toxic and are therefore likely to decrease the presence of toxins of power.

Moving on to the meme aspect of the hypothesis, this would mean that memetic morph is unlikely to take place if certain anti-toxic behaviors are practiced:
In the first post of this series we talked about memetic morph whereby a meme changes through some corruption of memory.

Some of the morph that takes place in such a case has been described in our series as a partial corruption of the strands of memes within an individual's memory.

One allegorical or symbolic example can be demonstrated by comparing what happens when there is a phenomenon that appears as an "innocent corruption of memory" described by Dr. Roger A. Pielke Sr. engendered by the inaccurate reading of text.

Even this can lead to memetic morphs that generate corrupt memes then their propagation throughout a meme complex, and even beyond that.
(A Structure RE: Corruption of Memes - 2). Moving on to the hypothesis that microbes are the source for the origin of toxins of power, this indicates that certain behaviors increase the likelihood of microbial generation of toxins, but other behaviors decrease that likelihood.

We have support for that, in principle, from another post:
"the genetic argument allows us the luxury of ignoring past and present historical and social factors. In the words of Louis Menand who wrote in the New Yorker very astutely:
“It’s all in the genes”: an explanation for the way things are that does not threaten the way things are. Why should someone feel unhappy or engage in antisocial behavior when that person is living in the freest and most prosperous nation on Earth? It can’t be the system! There must be a flaw in the wiring somewhere.”
... which is a good way to put it. So the genetic argument is simply a cop-out that allows us to ignore the social and economic and political factors that in fact underlie many troublesome behaviors" (Dr. Maté).
(The "It's In Your Genes" Myth). The bottom line of these hypotheses is that behavior is a functional aspect of both toxin increase as well as toxin decrease, depending on the type of behavior.

It is important to note that this is not in conflict with the research, but to the contrary it is supported by the research.

Thursday, July 12, 2012

Microbial Hermeneutics - 2

Microbes
In the first post of this series we learned that microbes signal one another, that is, they communicate with each other.

In that post we also covered the issue of signal interpretation, that is, discerning which signals to listen to and how to interpret them.

In this post we will take that a bit further, and discuss the findings of science teams we have not yet considered, to learn that microbes actually communicate via a language all their own.

Their language is composed of molecules as words, molecules which the microbes construct within themselves, then broadcast for other microbes to receive, then interpret and act upon.

The importance of this reality cannot be underestimated.

I say this because one of the types of activity that microbes perform is to shape humans in various degrees, both in physical shape and size, including our brains, as well as to influence and/or control some of our behavior, including activating the most extreme behaviors (see Hypothesis: Microbes Generate Toxins of Power - 6).

The video at the bottom of the post has all the detail, since it is a microbiology science presentation by Dr. Bonnie Lynn Bassler, an American molecular biologist who has been a professor at Princeton University since 1994.

She and her team have discovered the "Rosetta Stone" of microbial languages, and can disrupt their hermeneutical processes, to essentially use propaganda to control, to some degree, the behavior of microbes.

The next post in this series is here, the previous post in this series is here.

Additionally, a follow-up interview with Dr. Bassler is here.

I am providing an index into the video which readers can use to focus on any subject more quickly by moving the guide with your mouse to any desired location for quicker review of particular subjects.
Index (time, subject)

00:21 - microbes are oldest life forms on Earth
01:03 - 10 times more microbes than human cells in us
01:31 - 100 times more microbial genes than human genes in us
02:00 - microbes are 99% of our make-up; they keep us alive
02:20 - microbes are vital for keeping us alive and healthy
04:20 - microbes talk with a molecular language
07:50 - quorum sensing (like a census) to know population count
08:20 - Intra species communication (shape of words) dialects
10:50 - microbes communicate with other microbes (multi-lingual)
11:20 - they take a census of all other microbes around them
12:30 - synthetic molecules-words interrupt communication
13:50 - synthetic molecules-words confuse the microbes
15:00 - they have collective, community behaviors
15:20 - microbes made the rules for multi-cellular development
16:00 - microbes invented multi-cellular behavior inside us
17:15 - the team



Friday, July 6, 2012

Hypothesis: Microbes Generate Toxins of Power - 6

Ancient Microbial Neurosurgeons
I am interrupting the flow of this series to change the expected topic, from a look at stem cells as was intended, to a look at microbial influence on the functioning of the human brain (see The Human Microbiome Congress).

Instead, this post will focus on some experimental and observational data that will bring more focus to this series.

We pause for more focus on the effects and affects that microbes have on human behavior.

Before going on into stem cell dynamics, which will still be discussed in a future post, I want to double down on the known science available which strongly supports the general premise involved in the notion that microbes can and do affect our thinking and/or our behavior.

This post will startle you, if previous ones haven't yet.

The bulk of scientific research that has been used in this series, so far, has been from microbiologists who were taking a look at primarily symbiotic relationships human cells have with microbial cells (see On The New Meaning of Being Human).

That involves microbes taking part in the development of our brains in ways that end up helping us as we help them (see Hypothesis: Microbes Generate Toxins of Power - 5).

That cooperation and peace can seem bland in some ways, possibly because of movies, television, and the like, where shoot-em-up bang-bang is the norm.

So, to grab your attention and focus on the earth-shaking reality we are talking about in this series, we will hold off on the discussion of stem cells to instead take a quick look at a parasitic microbe, one that does not have the good manners that symbiont microbes have.

That parasitic microbe is the protozoa Toxoplasma gondii ("Toxo") which, as a world renowned scientist explains, has incredible abilities:
The parasite my lab is beginning to focus on is one in the world of mammals, where parasites are changing mammalian behavior... Toxo instead has developed this amazing capacity to alter innate behavior in rodents... If you take a lab rat who is 5,000 generations into being a lab rat, since the ancestor actually ran around in the real world, and you put some cat urine in one corner of their cage, they're going to move to the other side. Completely innate, hard-wired reaction to the smell of cats, the cat pheromones. But take a Toxo-
"Complex" Is An Understatement
infected rodent, and they're no longer afraid of the smell of cats. In fact they become attracted to it. The most damn amazing thing you can ever see, Toxo knows how to make cat urine smell attractive to rats. And rats go and check it out and that rat is now much more likely to wind up in the cat's stomach. Toxo's circle of life completed.

... part of my lab has been trying to figure out the neurobiological aspects. The first thing is that it's for real. The rodents, rats, mice, really do become attracted to cat urine when they've been infected with Toxo. And you might say, okay, well, this is a rodent doing just all sorts of screwy stuff because it's got this parasite turning its brain into Swiss cheese or something. It's just non-specific behavioral chaos. But no, these are incredibly normal animals. Their olfaction is normal, their social behavior is normal, their learning and memory is normal. All of that. It's not just a generically screwy animal.

You say, okay well, it's not that, but Toxo seems to know how to destroy fear and anxiety circuits. But it's not that, either. Because these are rats who are still innately afraid of bright lights. They're nocturnal animals. They're afraid of big, open spaces. You can condition them to be afraid of novel things. The system works perfectly well there. Somehow Toxo can laser out this one fear pathway, this aversion to predator odors... Toxo preferentially knows how to home in on the part of the brain that is all about fear and anxiety, a brain region called the amygdala... Toxo knows how to get in there.

Next, we then saw that Toxo would take the dendrites, the branch and cables that neurons have to connect to each other, and shriveled them up in the amygdala. It was disconnecting circuits. You wind up with fewer cells there. This is a parasite that is unwiring this stuff in the critical part of the brain for fear and anxiety... It knows how to find that particular circuitry... Meanwhile, there is a well-characterized circuit that has to do with sexual attraction. And as it happens, part of this circuit courses through the amygdala, which is pretty interesting in and of itself, and then goes to different areas of the brain than the fear pathways... Toxo knows how to hijack the sexual reward pathway. And you get males infected with Toxo and expose them to a lot of the cat pheromones, and their testes get bigger. Somehow, this damn parasite knows how to make cat urine smell sexually arousing to rodents, and they go and check it out. Totally amazing... So what about humans? A small literature is coming out now reporting neuropsychological testing on men who are Toxo-infected, showing that they get a little bit impulsive... And then the truly astonishing thing: two different groups independently have reported that people who are Toxo-infected have three to four times the likelihood of being killed in car accidents involving reckless speeding... Maybe you take a Toxo-infected human and they start having a proclivity towards doing dumb-ass things that we should be innately averse to, like having your body hurdle through space at high G-forces. Maybe this is the same neurobiology... On a certain level, this is a protozoan parasite that knows more about the neurobiology of anxiety and fear than 25,000 neuroscientists standing on each other's shoulders... But no doubt it's also a tip of the iceberg of God knows what other parasitic stuff is going on out there. Even in the larger sense, God knows what other unseen realms of biology make our behavior far less autonomous than lots of folks would like to think.
(A Talk With Dr. Sapolsky). Bingo, remember that this series is about a hypothesis that microbes may be the source of the toxins of power that corrupt the minds of officials who inhabit offices of power.

Part of this working hypothesis has been that the work the toxins do is focused on the human amygdala (see The Toxic Bridge To Everywhere).

We now know that there are symbiont microbes who help us in countless ways, and now we also know that there are microbes that are parasites, that is, they are not concerned with our best interests.

The previous post in this series is here.

Tuesday, April 10, 2012

Do Molecular Machines Deliver Toxins of Power?

Machines Had To Evolve First
In the search for the origin of the toxins of power, the Toxins of Power Blog has an attitude of "leave no meme unturned", "leave no molecule unturned", "leave no microbe unturned", and of course "leave no stone unturned."

In that regard, we looked at posts that deal with the study of memetics.

That inquiry included a look at historical attempts to establish the discipline of memetics, as well as some suggestions for the future of that discipline, in the context of using those theories in some manner that would aid us in our search for the origins of toxins of power.

After some theoretical fun with memetics, we picked up the microscope and took a look at the utterly astounding world of microbes.

But we had to move along, taking the search deeper, and while searching deeper we ran across a statement by a scientist whose paper flatly said that any complete inquiry into evolution would necessarily include chemistry:
Dr Clarke said: “There are a lot of fundamental questions about the origins of life and many people think they are questions about biology. But for life to have evolved, you have to have a moment when non-living things become living – everything up to that point is chemistry.”
(Putting A Face On Machine Mutation - 2, emphasis added). The word "chemistry" conjures up beakers, flasks, and people moving around a laboratory in white coats, but it is also, in large part, the study of molecules and atoms (see chemical elements).

A statement by a scientist concerning that episode of our inquiry caught our attention and set another course for us:
“Our cells, and the cells of all organisms, are composed of molecular machines. These machines are built of component parts, each of which contributes a partial function or structural element to the machine. How such sophisticated, multi-component machines could evolve has been somewhat mysterious, and highly controversial.” Professor Lithgow said.
(Are Toxins of Power Machines or Organisms?, emphasis added). Another paper indicated that a closer look, in that direction, was needed:
Many cellular processes are carried out by molecular ‘machines’ — assemblies of multiple differentiated proteins that physically interact to execute biological functions ... Our experiments show that increased complexity in an essential molecular machine evolved because of simple, high-probability evolutionary processes, without the apparent evolution of novel functions. They point to a plausible mechanism for the evolution of complexity in other multi-paralogue protein complexes.
(Evolution ... a molecular machine, Nature, emphasis added). An interesting article in Wikipedia made a simple statement that helped:
The most complex molecular machines are found within cells.
(Molecular Machine). We then had a very distinct place to focus the search toward a distinct mechanism that generated toxins, and we found one:
Writing in the journal PLoS Pathogens, the team from Queen Mary's School of Biological and Chemical Sciences show how they studied the molecular machine known as the 'type II bacterial secretion system', which is responsible for delivering potent toxins from bacteria such as enterotoxigenic E. coli and Vibrio cholerae into an infected individual.

Professor Richard Pickersgill, who led the research, said: "Bacterial secretion systems deliver disease causing toxins into host tissue. If we can understand how these machines work, then we can work out how it they might be stopped."
(Decoding the Molecular Machine, emphasis added). Bingo, that is a perfect fit for a place to stay and study a while (see also Structure and function of mammalian cilia, where the term "molecular motor" is used).

Future posts will fuse the Microbial Hermeneutics series with the Hypothesis: Microbes Generate Toxins of Power series, so as to fine tune the concept of a molecular machine with a toxin of power generating mechanism.